Publications

  1. DIGGER 2.0: digging into the functional impact of differential splicing on human and mouse disorders [open access]
    Elias Albrecht, Konstantin Pelz, Alexander Gress, Hieu Nguyen Trung, Olga V Kalinina, Tim Kacprowski, Jan Baumbach, Markus List, Olga Tsoy
    Nucleic Acids Research, Volume 53, Issue W1
    https://doi.org/10.1093/nar/gkaf384

  2. Distinct inflammatory imprint in non-cirrhotic and cirrhotic patients before and after direct-acting antiviral therapy [open access]
    Moana Witte, Carlos Oltmanns, Jan Tauwaldt, Hagen Schmaus, Jasmin Mischke, Gordon Grabert, Mara Bretthauer, Lennart M. Roesner, Thomas Werfel, Katja Deterding, Benjamin Maasoumy, Heiner Wedemeyer, Tim Kacprowski, Anke R. M. Kraft, Markus Cornberg
    Clinical and Molecular Hepatology, Volume 31
    https://doi.org/10.3350/cmh.2025.0292

  3. Domain Specific Transfer Learning and Classifier Chains in Alzheimer’s Disease Detection using 3D Convolutional Neural Networks [open access]
    Informatics in Medicine Unlocked, Volume 59
    https://doi.org/10.1016/j.imu.2025.101711

  4. Integrative multi-omics analysis of growth plate regulation underlying body size in miniature pigs [open access]
    Nadia Khaveh, Jan Berghöfer, Ralph Brehm, René Buschow, Karsten Cirksena, Cord Drögemüller, Abeera Fatima, Gordon Grabert, Gisa Gerold, Alexander Grahofer, Ralf Herwig, Klaus Jung, Tim Kacprowski, Bai-Wei Lo, Roya Shiasi Sardoabi, Martin Vingron, Stefan Mundlos, Julia Metzger
    Nature Portfolio Preprint (Under Review)
    https://doi.org/10.21203/rs.3.rs-7865536/v1

  5. Large language models for surgical informed consent: An ethical perspective on simulated empathy [open access]
    Pranab Rudra, Wolf-Tilo Balke, Tim Kacprowski, Frank Ursin, Sabine Salloch
    Journal of Medical Ethics, Volume 52, Issue 2
    https://doi.org/10.1136/jme-2024-110652

  6. The haplotype-resolved assembly of COL40 a cassava (Manihot esculenta) line with broad-spectrum resistance against viruses causing Cassava brown streak disease unveils a region of highly repeated elements on chromosome 12 [open access]
    Corinna Thoben, Boas Pucker, Stephan Winter, Bethany Fallon Econopouly, Samar Sheat
    G3 Genes|Genomes|Genetics, Volume 15, Issue 6
    https://doi.org/10.1093/g3journal/jkaf083

  7. Zusammenwirken von natürlicher und künstlicher Intelligenz: Beurteilen – Messen – Bewerten
    Otto Richter, Uwe Drewitz, Reinhold Haux, Stefan Heuser, Tim Kacprowski, Jochen Steil
    Springer Nature Book
    https://doi.org/10.1007/978-3-658-45845-4.
  1. A 19-color single-tube full spectrum flow cytometry assay for the detection of measurable residual disease in acute myeloid leukemia [open access]
    Hendrik Fokken, Julian Waclawski, Nadine Kattre, Arnold Kloos, Sebastian Müller,  Max Ettinger, Tim Kacprowski,  Michael Heuser, Tobias Maetzig, Adrian Schwarzer
    Cytrometry Part A: Journal of Quantitative Cell Science, Volume 105, Issue 3
    https://doi.org/10.1002/cyto.a.24811

  2. Alternative splicing in mechanically stretched podocytes as a model of glomerular hypertension
    Francescapaola Mattias, Olga Tsoy, Elke Hammer, Alexander Gress, Stefan Simm, Chit Tong Lio, Sabine Ameling, Kerstin Amann, Leonie Dreher, Ulrich Wenzel, Tim Kacprowski, Markus List, Olga Kalinina, Karlhans Endlich, Jan Baumbach, Uwe Völker, Nicole Endlich, Felix Kliewe
    Journal of the American Society of Nephrology, Volume 36
    https://doi.org/10.1101/2024.07.17.603550

  3. Fake paper identification in the pool of withdrawn and rejected manuscripts submitted to Naunyn–Schmiedeberg’s Archives of Pharmacology[open access]Jonathan Wittau, Serkan Celik, Tim Kacprowski, Thomas M. Deserno, Roland Seifert Naunyn-Schmiedeberg’s Archives of Pharmacology, Volume 397 https://doi.org/10.1007/s00210-023-02741-w

  4. Family history of cancer and lung cancer: Utility of big data and artificial intelligence for exploring the role of genetic risk [open access]
    Virginia Calvo, Emetis Niazmand, Enric Carcereny, Delvys Rodriguez-Abreu, Manuel Cobo, Rafael López-Castro, María Guirado, Carlos Camps, Ana Laura Ortega, Reyes Bernabé, Bartomeu Massutí, Rosario Garcia-Campelo, Edel del Barco, José Luis González-Larriba, Joaquim Bosch-Barrera, Marta Martínez, María Torrente, María-Esther Vidal, Mariano Provencio
    Lung Cancer, Volume 195
    https://doi.org/10.1016/j.lungcan.2024.107920

  5. Heat shock interferes with the amino acid metabolism of bovine cumulus-oocyte complexes in vitro: a multistep analysis [open access]
    Hayder Radhi Hussein Mzedawee, Rasoul Kowsar, Reza Moradi-Hajidavaloo, Roya Shiasi-Sardoabi, Khaled Sadeghi, Mohammad Hossein Nasr-Esfahani, Mehdi Hajian
    Amino Acids, Volume 56
    https://doi.org/10.1007/s00726-023-03370-6

  6. Inference of differential gene regulatory networks using boosted differential trees [open access]
    Gihanna Galindez, Markus List, Jan Baumbach, Uwe Völker, Ulrike Mäder, David B. Blumenthal, Tim Kacprowski
    Bioinformatics Advances, Volume 4, Issue 1
    https://doi.org/10.1093/bioadv/vbae034

  7. Inflammatory milieu alterations associated with carcinogenesis persist in cirrhotic patients despite HCV cure
    Moana Witte, Carlos Oltmanns, Jan Tauwaldt, Hagen Schmaus, Jasmin Mischke, Gordon Grabert, Mara Bretthauer, Katja Deterding, Benjamin Maasoumy, Heiner Wedemeyer, Tim Kacprowski, Anke Kraft, Markus Cornberg
    Zeitschrift für Gastroenterologie, Volume 62
    10.1055/s-0043-1777641

  8. MeTEor: an R Shiny app for exploring longitudinal metabolomics data [open access]
    Gordon Grabert, Daniel Dehncke, Tushar More, Markus List, Anke R. M. Kraft, Markus Cornberg, Karsten Hiller, Tim Kacprowski
    Bioinformatics Advances, Volume 4, Issue 1
    https://doi.org/10.1093/bioadv/vbae178

  9. Network medicine-based epistasis detection in complex diseases: ready for quantum computing [open access]
    Markus Hoffmann, Julian M. Poschenrieder, Massimiliano Incudini, Sylvie Baier, Amelie Fritz, Andreas Maier, Michael Hartung, Christian Hoffmann, Nico Trummer, Klaudia Adamowicz, Mario Picciani, Evelyn Scheibling, Maximilian V. Harl, Ingmar Lesch, Hunor Frey, Simon Kayser, Paul Wissenberg, Leon Schwartz, Leon Hafner, Aakriti Acharya, Lena Hackl, Gordon Grabert, Sung-Gwon Lee, Gyuhyeok Cho, Matthew E. Cloward, Jakub Jankowski, Hye K. Lee, Olga Tsoy, Nina Wenke, Anders G. Pedersen, Klaus Bønnelykke, Antonio Mandarino, Federico Melograna, Laura Schulz, Héctor Climente-González, Mathias Wilhelm, Luigi Iapichino, Lars Wienbrandt, David Ellinghaus, Kristel Van Steen, Michele Grossi, Priscilla A. Furth, Lothar Hennighausen, Alessandra Di Pierro, Jan Baumbach, Tim Kacprowski, Markus List, David B. Blumenthal
    Nucleic Acids Research, Volume 52, Issue 17
    https://doi.org/10.1093/nar/gkae697

  10. On the limits of 16S rRNA gene-based metagenome predictionand functional profiling [open access] Monica S. Matchado, Malte Rühlemann, Sandra Reitmeier, Tim Kacprowski, Fabian Frost, Dirk Haller, Jan Baumbach, Markus List Microbial Genomics, Volume 10, Issue 2 https://doi.org/10.1099/mgen.0.001203

  11. PALADIN: A process-based constraint language for data validation [open access]
    Antonio Jesus Diaz-Honrubia, Philipp D. Rohde, Emetis Niazmand, Ernestina Menasalvas, Maria-Esther Vidal
    Information Fusion, Volume 112 https://doi.org/10.1016/j.inffus.2024.102557

  12. Real-time ECG-monitoring in virtual reality
    Willi Schüler, Lisa-Marie Bente, Thomas M. Deserno, Tim Kacprowski
    Proceedings of Medical Imaging 2024: Imaging Informatics for Healthcare, Research, and Applications
    https://doi.org/10.1117/12.3006472

  13. RNA sequencing depth guidelines for the study of alternative splicing [open access]
    Olga Tsoy, Sabine Ameling, Sören Franzenburg, Markus Hoffmann, Lina Liv-Willuth, Hye Kyung Lee, Ludwig Knabl, Priscilla A. Furth, Uwe Völker, Lothar Hennighausen, Jan Baumbach, Tim Kacprowski, Markus List
    bioRxiv preprint
    https://doi.org/10.1101/2024.10.09.617406

  14. SAT-363 Hepatocellular carcinoma development post hepatitis C virus cure is associated with distinct changes in the dynamics of the soluble inflammatory milieu
    Moana Witte, Carlos Oltmanns, Jan Tauwaldt, Hagen Schmaus, Jasmin Mischke, Leon Kalix, Gordon Grabert, Mara Bretthauer, Katja Deterding, Benjamin Maasoumy, Heiner Wedemeyer, Tim Kacprowski, Anke R.M. Kraft, and Markus Cornberg
    Journal of Hepatology, Volume 80, Supplement 1, Poster Presentations
    https://doi.org/10.1016/S0168-8278(24)02069-5

  15. Validation of the predictive value of BDNF -87 methylation for antidepressant treatment success in severely depressed patients—a randomized rater-blinded trial [open access]
    Hannah Benedictine Maier, Alexandra Neyazi, Gabriel L. Bundies, Fiona Meyer-Bockenkamp, Stefan Bleich, Hansi Pathak, Yvonne Ziert, Barbara Neuhaus, Franz-Josef Müller, Iris Pollmann, Thomas Illig, Stefanie Mücke, Meike Müller, Brinja Kira Möller, Steffen Oeltze-Jafra, Tim Kacprowski, Jan Voges, Fabian Müntefering, Josef Scheiber, Andreas Reif, Mareike Aichholzer, Christine Reif-Leonhard, Maren Schmidt-Kassow, Ulrich Hegerl, Hanna Reich, Stefan Unterecker, Heike Weber, Jürgen Deckert, Nicole Bössel-Debbert, Hans J. Grabe, Michael Lucht, Helge Frieling
    Trials, Volume 25
    https://doi.org/10.1186/s13063-024-08061-5

  16. VISPER-Visualization System for Interactions between Proteins and Drugs for Exploratory Research [open access]
    Daniel Dehncke, Vinzenz Fiebach, Lennart Kinzel, Knut Baumann, Tim Kacprowski
    VCBM 2024: Eurographics Workshop on Visual Computing for Biology and Medicine
    https://doi.org/10.2312/vcbm.20241190
    1. A visualization tool for continuous reference intervals based on GAMLSS [open access]
      Sandra Klawitter, Tim Kacprowski
      Journal of Laboratory Medicine, Volume 47, Issue 4
      https://doi.org/10.1515/labmed-2023-0033
    2. Alternative splicing analysis benchmark with DICAST [open access]
      Amit Fenn, Olga Tsoy, Tim Faro, Fanny L. M. Rößler, Alexander Dietrich, Johannes Kersting, Zakaria Louadi, Chit Tong Lio, Uwe Völker, Jan Baumbach, Tim Kacprowski, Markus List
      NAR Genomics and Bioinformatics, Volume 5, Issue 2
      https://doi.org/10.1093/nargab/lqad044
    3. Alternative splicing impacts microRNA regulation within coding regions [open access] Lena M. Hackl, Amit Fenn, Zakaria Louadi, Jan Baumbach, Tim Kacprowski, Markus List, Olga Tsoy NAR Genomics and Bioinformatics, Volume 5, Issue 3 https://doi.org/10.1093/nargab/lqad081
    4. ATF6 activation alters colonic lipid metabolism causing tumor-associated microbial adaptation  [open access]
      Olivia I. Coleman, Adam Sorbie, Alessandra Riva, Miriam von Stern, Stephanie Kuhls, Denise M. Selegato, Nikolai Köhler, Jakob Wirbel, Tim Kacprowski, Andreas Dunkel, Josh K. Pauling, Johannes Plagge, Diego Mediel-Cuadra, Sophia Wagner, Ines Chadly, Sandra Bierwith, Tingying Peng, Thomas Metzler, Clemens Schafmayer, Sebastian Hinz, Christian Röder, Christoph Röcken, Michael Zimmermann, Philip Rosenstiel, Katja Steiger, Moritz Jesinghaus, Gerhard Liebisch, Josef Ecker, Christina Schmidt, Georg Zeller, Klaus-Peter Janssen, Dirk Haller
      biorXiv preprint
      https://doi.org/10.1101/2023.11.03.565267
    5. Automatic annotation of the bHLH gene family in plants [open access]
      Corinna Thoben, Boas Pucker 
      BMC Genomics, Volume
      https://doi.org/10.1186/s12864-023-09877-2
    6. Deep Learning in the Detection of Rare Fractures – Development of a “Deep Learning Convolutional Network” Model for Detecting Acetabular Fractures Felix Erne, Daniel Dehncke, Steven C. Herath, Fabian Springer, Nico Pfeifer, Ralf Eggeling, and Markus A. Küper Zeitschrift für Orthopädie und Unfallchirurgie, Volume 161, Issue 1 https://doi.org/10.1055/a-1577-4645
    7. Independent Tissue-Based Biomarkers in Endometrioid Endometrial Cancer: Tumor Budding in Microsatellite Instability and WHO Grading in Copy-Number-Low Patients [open access]
      Fabian Stögbauer, Barbara Geß, Christine Brambs, Manuela Lautizi, Tim Kacprowski, Iordanis Ourailidis, Holger Bronger, Marion Kiechle, Aurelia Noske, Gisela Keller, Moritz Jesinghaus, Christopher Poremba, Wilko Weichert, Melanie Boxberg
      Cancers, Volume 15, Issue 15
      https://doi.org/10.3390/cancers15153832
    8. Knowledge graphs for enhancing transparency in health data ecosystems1 [open access]
      Fotis Aisopos, Samaneh Jozashoori, Emetis Niazmand, Disha Purohit, Ariam Rivas, Ahmad Sakor, Enrique Iglesias, Dimitrios Vogiatzis, Ernestina Menasalvas, Alejandro Rodriguez Gonzalez, Guillermo Vigueras, Daniel Gomez-Bravo, Maria Torrente, Roberto Hernández López, Mariano Provencio Pulla, Athanasios Dalianis, Anna Triantafillou, Georgios Paliouras, Maria-Esther Vidal
      Semantic Web: – Interoperability, Usability, Applicability, Volume 14, Issue 5
      https://doi.org/10.3233/SW-223294
    9. Knowledge4COVID-19: A semantic-based approach for constructing a COVID-19 related knowledge graph from various sources and analyzing treatments’ toxicities Ahmad Sakor, Samaneh Jozashoori, Emetis Niazmand, Ariam Rivas, Konstantinos Bougiatiotis, Fotis Aisopos, Enrique Iglesias, Philipp D. Rohde, Trupti Padiya, Anastasia Krithara, Georgios Paliouras, Maria-Esther Vidal Journal of Web Semantics, Volume 75 https://doi.org/10.1016/j.websem.2022.100760
    10. Lacking mechanistic disease definitions and corresponding association data hamper progress in network medicine and beyond [open access]
      Sepideh Sadegh, James Skelton, Elisa Anastasi, Andreas Maier, Klaudia Adamowicz, Anna Möller, Nils M. Kriege, Jaanika Kronberg, Toomas Haller, Tim Kacprowski, Anil Wipat, Jan Baumbach, David B. Blumenthal
      Nature Communications, Volume 14
      https://doi.org/10.1038/s41467-023-37349-4
    11. MA03.11 Big Data and Artificial Intelligence for Exploring the Role of Genetic Risk. Family History of Cancer and Lung Cancer. Results from CLARIFY [open access]
      V. Calvo, M.E. Vidal, Emetis Niazmand, E. Carcereny, D. Rodriguez Abreu, M. Cobo, J.M. Trigo, R. López, M. Guirado, C. Camps, A.L. Ortega, R. Bernabe, B. Massutí, R. García Campelo, E. del Barco, M. Martínez, A. Collazo-Lorduy, M. Blanco, M. Torrente, M. Provencio
      Journal of Thoracic Oncology, Volume 18, Issue 11
      https://doi.org/10.1016/j.jtho.2023.09.135
    12. Measurement of Individual Alteration in Perioperative ECGs During Elective Percutaneous Coronary Intervention [open access]
      Philip Gemke, Theresa Bender, Ennio Idrobo-Avila, Henning Dathe, Dagmar Krefting, Tim Kacprowski, Nicolai Spicher  
      arXiv preprint
      https://doi.org/10.48550/arXiv.2302.05177
    13. Mo1903 PROCESSED POLYMERIC DIETS EXACERBATE TUMORIGENESIS IN MURINE MODELS OF ATF6-DRIVEN COLON CANCER  [open access]
      Miriam Ecker, Olivia Coleman, Sandra Bierwirth, Adam Sorbie, Philipp Weber, Nikolai Köhler, Tim Kacprowski, Miriam Wimmer, Andreas Dunkel, Josch Pauling, Josef Ecker, Karin Kleigrewe, Jan Baumbach, Philip Rosenstiel, Katja Steiger, Moritz Jesinghaus, Klaus Janssen, Dirk Haller
      Gastroenterology, Volume 164
      https://doi.org/10.1016/S0016-5085(23)03156-6
    14. Network-based approaches for modeling disease regulation and progression [open access]
      Gihanna Galindez, Sepideh Sadegh, Jan Baumbach, Tim Kacprowski, Markus List
      Computational and Structural Biotechnology Journal, Volume 21
      https://doi.org/10.1016/j.csbj.2022.12.022
    15. New Enhancing MRI Lesions Associate with IL-17, Neutrophil Degranulation and Integrin Microparticles: Multi-Omics Combined with Frequent MRI in Multiple Sclerosis [open access]
      Zsolt Illes, Malene Møller Jørgensen, Rikke Bæk, Lisa-Marie Bente, Jørgen T. Lauridsen, Kirsten H. Hyrlov, Christopher Aboo, Jan Baumbach, Tim Kacprowski, Francois Cotton, Charles R. G. Guttmann, Allan Stensballe
      Biomedicines, Volume 11
      https://doi.org/10.3390/biomedicines11123170
    16. Should Artificial Intelligence be used to support clinical ethical decision-making? A systematic review of reasons [open access]
      Lasse Benzinger, Frank Ursin, Wolf‑Tilo Balke, Tim Kacprowski, Sabine Salloch
      BMC Medical Ethics, Volume 24
      https://doi.org/10.1186/s12910-023-00929-6
    17. The FeatureCloud Platform for Federated Learning in Biomedicine: Unified Approach [open access]
      Julian Matschinske, Julian Späth, Mohammad Bakhtiari, Niklas Probul, Mohammad M. K. Majdabadi, Reza Nasirigerdeh, Reihaneh Torkzadehmahani, Anne Hartebrodt, Balazs-Attila Orban, Sándor-József Fejér, Olga Zolotareva,  Supratim Das, Linda Baumbach, Josch K. Pauling, Olivera Tomašević, Béla Bihari, Marcus Bloice, Nina C. Donner, Walid Fdhila,  Tobias Frisch, Anne-Christin Hauschild, Dominik Heider,  Andreas Holzinger, Walter Hötzendorfer, Jan Hospes, Tim Kacprowski, Markus Kastelitz, Markus List, Rudolf Mayer, Mónika Moga, Heimo Müller, Anastasia Pustozerova, Richard Röttger, Christina C. Saak, Anna Saranti, Harald H. H. W. Schmidt, Christof Tschohl, Nina K. Wenke, Jan Baumbach
      Journal of Medicine Internet Research, Volume 25
      https://doi.org/10.2196/42621
    18. The impact of cirrhosis on the inflammatory milieu before and long-term after hepatitis C virus elimination by direct-acting antiviral therapy [open access]
      Moana Witte, Carlos Oltmanns, Jan Tauwaldt, Hagen Schmaus, Jasmin Mischke, Gordon Grabert, Leon Kalix, Daniel Dehncke, Mara Bretthauer, Katja Deterding, Benjamin Maasoumy, Heiner Wedemeyer, Tim Kacprowski, Anke R.M. Kraft, Markus Cornberg
      MedRxiv preprint https://doi.org/10.1101/2023.10.31.23297828
    1. A zlog-based algorithm and tool for plausibility checks of reference intervals
      Sandra Klawitter, Georg Hoffmann, Stefan Holdenrieder, Tim Kacprowski, Frank Klawonn
      Clinical Chemistry and Laboratory Medicine (CCLM), Volume 61, Number 2
      https://doi.org/10.1515/cclm-2022-0688
    2. Efficient semantic summary graphs for querying large knowledge graphs [open access]
      Emetis Niazmand, Gezim Sejdiu, Damien Graux, Maria-Esther Vidal
      arXiv preprint
      https://doi.org/10.48550/arXiv.2205.13883
    3. Forecasting admissions in psychiatric hospitals before and during Covid-19: a retrospective study with routine data [open access]
      Jan Wolff, Ansgar Klimke, Michael Marschollek, Tim Kacprowski
      Scientific Reports, Volume 12
      https://doi.org/10.1038/s41598-022-20190-y
    4. Gene-mapping study of extremes of cerebral small vessel disease reveals TRIM47 as a strong candidate [open access]
      Aniket Mishra, Cécile Duplaà, Dina Vojinovic, Hideaki Suzuki, Muralidharan Sargurupremraj, Nuno R. Zilhão, Shuo Li, Traci M. Bartz, Xueqiu Jian, Wei Zhao, Edith Hofer, Katharina Wittfeld, Sarah E. Harris, Sandra van der Auwera-Palitschka, Michelle Luciano, Joshua C. Bis, Hieab H. H. Adams, Claudia L. Satizabal, Rebecca F. Gottesman, Piyush G. Gampawar, Robin Bülow, Stefan Weiss, Miao Yu, Mark E. Bastin, Oscar L. Lopez, Meike W. Vernooij, Alexa S. Beiser, Uwe Völker, Tim Kacprowski, Aicha Soumare, Jennifer A. Smith, David S. Knopman, Zoe Morris, Yicheng Zhu, Jerome I. Rotter, Carole Dufouil, Maria Valdés Hernández, Susana Muñoz Maniega, Mark Lathrop, Erik Boerwinkle, Reinhold Schmidt, Masafumi Ihara, Bernard Mazoyer, Qiong Yang, Anne Joutel, Elizabeth Tournier-Lasserve, Lenore J. Launer, Ian J. Deary, Thomas H. Mosley, Philippe Amouyel, Charles S. DeCarli, Bruce M. Psaty, Christophe Tzourio, Sharon L. R. Kardia, Hans J. Grabe, Alexander Teumer, Cornelia M. van Duijn, Helena Schmidt, Joanna M. Wardlaw, Mohammad A. Ikram, Myriam Fornage, Vilmundur Gudnason, Sudha Seshadri, Paul M. Matthews, William T. Longstreth, Thierry Couffinhal, Stephanie Debette
      Brain, Volume 145, Issue 6
      https://doi.org/10.1093/brain/awab432
    5. Hypothesis of a potential BrainBiota and its relation to CNS autoimmune inflammation [open access]
      Maria L. Elkjaer, Lukas Simon, Tobias Frisch, Lisa-Marie Bente, Tim Kacprowski, Mads Thomassen, Richard Reynolds, Jan Baumbach, Richard Röttger, Zsolt Illes
      Frontiers in Immunology, Section Multiple Sclerosis and Neuroimmunology, Volume 13
      https://doi.org/10.3389/fimmu.2022.1043579
    6. Medical data safety via federated machine learning [open access]
      Anne Hartebrodt, Reza Nasirigerdeh, Jan Bamubach, David B. Blumenthal, Tim Kacprowski, Richard Rottger
      International Conference on Systems Medicine, AI & Drug Repurposing
      https://doi.org/10.14293/S2199-1006.1.SOR-.PPPY1JE1.v1
    7. NeDRex – an integrative and interactive network medicine platform for drug repurposing [open access]
      Sepideh Sadegh, James Skelton, Elisa Anastasi, David B. Blumenthal,   Andreas Maier, Gihanna Galindez, Cristian Nogales, Ana I. Casas, Harald H. H. W. Schmidt, Anil Wipat, Tim Kacprowski, Jan Baumbach
      International Conference on Systems Medicine, AI & Drug Repurposing
      https://doi.org/10.14293/S2199-1006.1.SOR-.PPPY90R8.v1
    8. Not Quite the Same: How Alternative Splicing Affects Protein Interactions
      Zakaria Louadi,  Olga Tsoy,  Jan Baumbach,  Tim Kacprowski,  Markus List
      Protein Interactions: The Molecular Basis of Interactomics, Chapter 16
      https://doi.org/10.1002/9783527830503.ch16
    9. P057 Mucosal microbiota adapts to ATF6-induced alterations in host lipid metabolism with prognostic value in colorectal cancer [open access]
      Sandra Bierwirth, Adam Sorbie, Olivia I. Coleman, Elena M. Reuß, Philipp Weber, Nikolai Köhler, Tim Kacprowski, Andreas Dunkel, Josch K. Pauling, Josef Ecker, Jan Baumbach, Philip Rosenstiel, Katja Steiger, Jakob Wirbel, Georg Zeller, Klaus-Peter Janssen, Dirk Haller
      Journal of Crohn’s and Colitis, Volume 16, Issue Supplement_1
      https://doi.org/10.1093/ecco-jcc/jjab232.186
    10. P401: NEXT-GENERATION FLOW CYTOMETRY TO DETECT MEASURABLE RESIDUAL DISEASE IN ACUTE MYELOID LEUKEMIA USING A 19-COLOR FULL SPECTRUM FLOW CYTOMETRY PANEL
      Hendrik Fokken, Nadine Kattre, Arnold Kloos, Michael Heuser, Tim Kacprowski, Maetzig Tobias, Adrian Schwarzer
      HemaSphere, Volume 6, Poster
      https://doi.org/10.1097/01.HS9.0000844492.95259.c6
    11. Privacy-Preserving Artificial Intelligence Techniques in Biomedicine [Open Access]
      Reihaneh Torkzadehmahani, Reza Nasirigerdeh, David B. Blumenthal, Tim Kacprowski, Markus List, Julian Matschinske, Julian Spaeth, Nina Kerstin Wenke, Jan Baumbach
      Methods of Information in Medicine, Volume 61, Issue S01
      https://doi.org/10.1055/s-0041-1740630
    12. Robust disease module mining via enumeration of diverse prize-collecting Steiner trees [open access]
      Judith Bernett, Dominik Krupke, Sepideh Sadegh, Jan Baumbach, Sándor P. Fekete, Tim Kacprowski, Markus List, David B. Blumenthal
      Bioinformatics, Volume 38, Issue 6
      https://doi.org/10.1093/bioinformatics/btab876
    13. Small RNA Sequencing in the Tg4–42 Mouse Model Suggests the Involvement of snoRNAs in the Etiology of Alzheimer’s DiseaseChit T. Long, Tim Kacprowski, Maik Klaedtke, Lars R. Jensen, Yvonne Bouter, Thomas A. Bayer, Andreas W. Kuss Journal of Alzheimer’s Disease, Volume 87, Issue 4 https://doi.org/10.3233/JAD-220110
    14. sPLINK: a hybrid federated tool as a robust alternative to meta-analysis in genome-wide association studies [open access]
      Reza Nasirigerdeh, Reihaneh Torkzadehmahani, Julian Matschinske, Tobias Frisch, Markus List, Julian Späth, Stefan Weiss, Uwe Völker, Esa Pitkänen, Dominik Heider, Nina K. Wenke, Georgios Kaissis, Daniel Rueckert, Tim Kacprowski, Jan Baumbach
      Genome Biology, Volume 23
      https://doi.org/10.1186/s13059-021-02562-1
    15. Systematic analysis of alternative splicing in time course data using Spycone [open access]
      Chit Tong Lio, Zakaria Louadi, Amit Fenn, Jan Baumbach, Tim Kacprowski, Markus List, Olga Tsoy
      Bioinformatics, Volume 39, Issue 1
      https://doi.org/10.1093/bioinformatics/btac846
    16. The Limits of Molecular Signatures for Pancreatic Ductal Adenocarcinoma Subtyping [open access]
      Manuela Lautizi, Jan Baumbach, Wilko Weichert, Katja Steiger, Markus List, Nicole Pfarr, Tim Kacprowski
      NAR Cancer, Volume 4, Issue 4
      https://doi.org/10.1093/narcan/zcac030
    17. Tumour cell budding and spread through air spaces in squamous cell carcinoma of the lung – Determination and validation of optimal prognostic cut-offs
      Fabian Stögbauer, Manuela Lautizi, Mark Kriegsmann, Hauke Winter, Thomas Muley, Katharina Kriegsmann, Moritz Jesinghaus, Jan Baumbach, Peter Schüffler, Wilko Weichert, Tim Kacprowski, Melanie Boxberg
      Lung Cancer, Volume 169
      https://doi.org/10.1016/j.lungcan.2022.04.012
   
  1. 1730P Cancer long survivor artificial intelligence follow-up (CLARIFY): Family history of cancer and lung cancer [abstract open access]
    V. Calvo, Emetis Niazmand, E. Carcereny, S. Jozashoori, D. Rodriguez, R. Lopez Castro, M. Guirado, C.J. Camps, R. Bernabe Caro, A.L. Ortega Granados, B. Massuti Sureda, M.A. Cobo Dols, M.R. Garcia Campelo, E. del Barco, J. Bosch-Barrera, J.L. Gonzalez-Larriba, T. Moran, A. Collazo, M.E. Vidal, M. Provencio
    Annals of Oncology, Volume 32, Supplement 5
  2. A framework for modeling epistatic interaction [open access]
    David B. Blumenthal, Jan Baumbach, Markus Hoffmann, Tim Kacprowski, Markus List
    Bioinformatics, Volume 37, Issue 12
  3. ASimulatoR: splice-aware RNA-Seq data simulation [open access]
    Quirin Manz, Olga Tsoy, Amit Fenn, Jan Baumbach, Uwe Völker, Markus List, Tim Kacprowski
    Bioinformatics, Volume 37, Issue 12
    https://doi.org/10.1093/bioinformatics/btab142
  4. BiCoN: network-constrained biclustering of patients and omics data [open access]
    Olga Lazareva, Stefan Canzar, Kevin Yuan, Jan Baumbach, David B. Blumenthal, Paolo Tieri, Tim Kacprowski, Markus List
    Bioinformatics, Volume 37, Issue 16
    https://doi.org/10.1093/bioinformatics/btaa1076
  5. Carrying asymptomatic gallstones is not associated with changes in intestinal microbiota composition and diversity but cholecystectomy with significant dysbiosis [open access]
    Fabian Frost, Tim Kacprowski, Malte Rühlemann, Stefan Weiss, Corinna Bang, Andre Franke, Maik Pietzner, Ali A. Aghdassi, Matthias Sendler, Uwe Völker, Henry Völzke, Julia Mayerle, Frank U. Weiss, Georg Homuth, Markus M. Lerch
    Scientific Reports, Volume 11
    https://doi.org/10.1038/s41598-021-86247-6
  6. CSF proteome in multiple sclerosis subtypes related to brain lesion transcriptomes [open access]
    Maria L. Elkjaer, Arkadiusz Nawrocki, Tim Kacprowski, Pernille Lassen, Anja Hviid Simonsen, Romain Marignier, Tobias Sejbaek, Helle H. Nielsen, Lene Wermuth, Alyaa Yakut Rashid, Peter Høgh, Finn Sellebjerg, Richard Reynolds, Jan Baumbach, Martin R. Larsen, Zsolt Illes
    Scientific Reports, Volume 11
    https://doi.org/10.1038/s41598-021-83591-5
  7.  DIGGER: exploring the functional role of alternative splicing in protein interactions [open access]
    Zakaria Louadi, Kevin Yuan, Alexander Gress, Olga Tsoy, Olga V Kalinina, Jan Baumbach, Tim Kacprowski, Markus List
    Nucleic Acids Research, Volume 49, Issue D1
    https://doi.org/10.1093/nar/gkaa768
  8. Enabling single-cell trajectory network enrichment
    Alexander G. B. Grønning, Mhaned Oubounyt, Kristiyan Kanev, Jesper Lund, Tim Kacprowski, Dietmar Zehn, Richard Röttger, Jan Baumbach
    Nature Computational Science, Volume 1
    https://doi.org/10.1038/s43588-021-00025-y
  9. Effects of different planes of milk feeding and milk total solids concentration on growth, ruminal fermentation, health, and behavior of late weaned dairy calves during summer [open access]
    Roya Shiasi Sardoabi, Malihe Alikhani, Farzad Hashemzadeh, M. Khorvash, Masoud Mirzaei, J. K. Drackley
    Journal of Animal Science Biotechnology, Volume 12, Issue 96
    https://doi.org/10.1186/s40104-021-00615-w
  10. Forecasting admissions in psychiatric hospitals before and during Covid-19: a retrospective study with routine [open access]
    Jan Wolff, Ansgar Klimke, Michael Marschollek, Tim Kacprowski
    Scientific Reports, Volume 12
    https://doi.org/10.1038/s41598-022-20190-y
  11. Functional enrichment of alternative splicing events with NEASE reveals insights into tissue identity and diseases [open access]
    Zakaria Louadi, Maria L. Elkjaer, Melissa Klug, Chit Tong Lio, Amit Fenn, Zsolt Illes, Dario Bongiovanni, Jan Baumbach, Tim Kacprowski, Markus List, Olga Tsoy
    Genome Biology, Volume 22
    https://doi.org/10.1186/s13059-021-02538-1
  12. Genome‑wide analysis of mitochondrial DNA copy number reveals loci implicated in nucleotide metabolism, platelet activation, and megakaryocyte proliferation [open access]
    Ryan J. Longchamps,  Stephanie Y. Yang,  Christina A. Castellani, Wen Shi, John Lane, Megan L. Grove,  Tracy M. Bartz, Chloé Sarnowski, Chunyu Liu, Kimberly Burrows, Anne L. Guyatt, Tom R. Gaunt, Tim Kacprowski, Jing Yang, Philip L. De Jager, Lz Yu, Aviv Bergman, Rui Xia, Myriam Fornage, Mary F. Feitosa, Mary K. Wojczynski, Aldi T. Kraja, Michael A. Province, Naseer Amin, Fanny Rivadeneira, Henning Tiemeier, André G. Uitterlinden, Linda Broer, Joyce B. J. Van Meurs, Cornelia M. Van Duijn, Laura M. Raffield,  Leslie Lange, Stephen S. Rich, Rozenn N. Lemaitre, Mark O. Goodarzi, Colleen M. Sitlani, Angel C. Y. Mak, David A. Bennett, Santiago Rodriguez, J. M. Murabito, Kathryn L. Lunetta, N. Sotoodehnia, Gil Atzmon, Kenny Ye, Nir Barzilai, Jennifer A. Brody,  Bruce M. Psaty, Kent D. Taylor, Jerome I. Rotter, Eric Boerwinkle, Nathan Pankratz, Dan E. Arking
    Human Genetics, Volume 141
    https://doi.org/10.1007/s00439-021-02394-w
  13. Lessons from the COVID-19 pandemic for advancing computational drug repurposing strategies [open access]
    Gihanna Galindez, Julian Matschinske, Tim Daniel Rose , Sepideh Sadegh, Marisol Salgado-Albarrán, Julian Späth, Jan Baumbach, Josch Konstantin Pauling
    Nature Computational Science, Volume 1
    https://doi.org/10.1038/s43588-020-00007-6
  14. Long-term instability of the intestinal microbiome is associated with metabolic liver disease, low microbiota diversity, diabetes mellitus and impaired exocrine pancreatic function [open access]
    Fabian Frost, Tim Kacprowski, Malte Rühlemann, Maik Pietzner, Corinna Bang, Andre Franke, Matthias Nauck, Uwe Völker, Henry Völzke, Marcus Dörr, Jan Baumbach, Matthias Sendler, Christian Schulz, Julia Mayerle, Frank U. Weiss, Georg Homuth, Markus M. Lerch
    Gut, Volume 70
    https://doi.org/10.1136/gutjnl-2020-322753
  15. MultiPep: a hierarchical deep learning approach for multi-label classification of peptide bioactivities [open access]
    Alexander G. B. Grønning, Tim Kacprowski, Camilla Schéele
    Biology Methods and Protocols, Volume 6, Issue 1
    https://doi.org/10.1093/biomethods/bpab021
  16. Network analysis methods for studying microbial communities: A mini review [open access]
    Monica Steffi Matchado, Michael Lauber, Sandra Reitmeier, Tim Kacprowski, Jan Baumbach, Dirk Haller, Markus List
    Computational and Structural Biotechnology Journal, Volume 19
    https://doi.org/10.1016/j.csbj.2021.05.001
  17. Network medicine for disease module identification and drug repurposing with the NeDRex platform [open access]
    Sepideh Sadegh, James Skelton, Elisa Anastas, Judith Bernett,  David B. Blumenthal, Gihanna Galindez, Marisol Salgado-Albarrán, Olga Lazareva, Keith Flanagan, Simon Cockell, Cristian Nogales, Ana I. Casas, Harald H. H. W. Schmidt, Jan Baumbach,  Anil Wipat, Tim Kacprowski
    Nature Communications, Volume 12
    https://doi.org/10.1038/s41467-021-27138-2
  18. The AIMe registry for artificial intelligence in biomedical research
    Julian Matschinske, Nicolas Alcaraz, Arriel Benis, Martin Golebiewski, Dominik G. Grimm, Lukas Heumos, Tim Kacprowski, Olga Lazareva, Markus List, Zakaria Louadi, Josch K. Pauling, Nico Pfeifer, Richard Röttger, Veit Schwämmle, Gregor Sturm, Alberto Traverso, Kristel Van Steen, Martiela Vaz de Freitas, Gerda Cristal Villalba Silva, Leonard Wee, Nina K. Wenke, Massimiliano Zanin, Olga Zolotareva, Jan Baumbach and David B. Blumenthal
    Nature Methods, Volume 18
    https://doi.org/10.1038/s41592-021-01241-0
  19. The FeatureCloud AI Store for Federated Learning in Biomedicine and Beyond [open access]
    Julian Matschinske, Julian Späth, Reza Nasirigerdeh, Reihaneh Torkzadehmahani, Anne Hartebrodt, Balázs Orbán, Sándor Fejér, Olga Zolotareva, Mohammad Bakhtiari, Béla Bihari, Marcus Bloice, Nina C. Donner, Walid Fdhila, Tobias Frisch, Anne-Christin Hauschild, Dominik Heider, Andreas Holzinger, Walter Hötzendorfer, Jan Hospes, Tim Kacprowski, Markus Kastelitz, Markus List, Rudolf Mayer, Mónika Moga, Heimo Müller, Anastasia Pustozerova, Richard Röttger, Anna Saranti, Harald HHW Schmidt, Christof Tschohl, Nina K. Wenke, Jan Baumbach
    arXiv preprint
    https://doi.org/10.48550/arXiv.2105.05734
  20. Transcriptome analysis of growth variation in early juvenile stage sandfish Holothuria scabra
    June Feliciano F. Ordoñez, Gihanna Gaye S.T. Galindez, Karina Therese Gulay, Rachel Ravago-Gotanco
    Genomics and Proteomics, Volume 40
    https://doi.org/10.1016/j.cbd.2021.100904
  21. Whole-body R2∗ mapping to quantify tissue iron in iron storage organs: reference values and a genotype [open access]
    Mary L. Kromrey, Anne Röhnert, Sophia Blum, Robert Winzer, Ralf T. Hoffman, Henry Völzke, Tim Kacprowski, Jens-Peter Kühn
    Genomics and Proteomics, Volume 40
    https://doi.org/10.1016/j.crad.2021.05.016
  1. Association of proteome and metabolome signatures with severity in patients with community-acquired pneumonia
    Manuela Gesell Salazar, Sophie Neugebauer, Tim Kacprowski, Stephan Michalik, Peter Ahnert, Petra Creutz, Maciej Rosolowski, Markus Löffler, Michael Bauer, Norbert Suttorp, Michael Kiehntopf, Uwe Völker
    Journal of Proteomics, Volume 214
    https://doi.org/10.1016/j.jprot.2019.103627
  2. Comparative single-cell trajectory network enrichment identifies pseudo-temporal systems biology patterns in hematopoiesis and CD8 T-cell development [open access]
    Alexander G. B. Grønning, Mhaned Oubounyt, Kristiyan Kanev, Jesper Lund, Tim Kacprowski, Dietmar Zehn, Richard Röttger, Jan Baumbach
    bioRxiv preprint
    https://doi.org/10.1101/2020.04.02.021295
  3. EpiGEN: an epistasis simulation pipeline [open access]
    David B. Blumenthal, Lorenzo Viola, Markus List, Jan Baumbach, Paolo Tieri, Tim Kacprowski
    Bioinformatics, Volume 36, Issue 19
    https://doi.org/10.1093/bioinformatics/btaa245
  4. Exploring the SARS-CoV-2 virus-host-drug interactome for drug repurposing [open access]
    Sepideh Sadegh1, Julian Matschinske, David B. Blumenthal, Gihanna Galindez, Tim Kacprowski, Markus List, Reza Nasirigerdeh, Mhaned Oubounyt, Andreas Pichlmair, Tim Daniel Rose, Marisol Salgado-Albarrán, Julian Späth, Alexey Stukalov, Nina K. Wenke, Kevin Yuan, Josch K. Pauling, Jan Baumbach
    Nature Communications, Volume 11, Article 3518
    https://doi.org/10.1038/s41467-020-17189-2
  5. Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity
    Hanieh Yaghootkar, Yiying Zhang, Cassandra N. Spracklen, Tugce Karaderi, Lam Opal Huang, Jonathan Bradfield, Claudia Schurmann, Rebecca S. Fine, Michael H. Preuss, Zoltan Kutalik, Laura B.L. Wittemans, Yingchang Lu, Sophia Metz, Sara M. Willems, Ruifang Li-Gao, Niels Grarup, Shuai Wang, Sophie Molnos, América A. Sandoval-Zárate, Mike A. Nalls, Leslie A. Lange, Jeffrey Haesser, Xiuqing Guo, Leo-Pekka Lyytikäinen, Mary F. Feitosa, Colleen M. Sitlani, Cristina Venturini, Anubha Mahajan, Tim Kacprowski, Carol A. Wang, Daniel I. Chasman, Najaf Amin, Linda Broer, Neil Robertson, Kristin L. Young, Matthew Allison, Paul L. Auer, Matthias Blüher, Judith B. Borja, Jette Bork-Jensen, Germán D. Carrasquilla, Paraskevi Christofidou, Ayse Demirkan, Claudia A. Doege, Melissa E. Garcia, Mariaelisa Graff, Kaiying Guo, Hakon Hakonarson, Jaeyoung Hong, Yii-Der Ida Chen, Rebecca Jackson, Hermina Jakupović, Pekka Jousilahti, Anne E. Justice, Mika Kähönen, Jorge R. Kizer, Jennifer Kriebel, Charles A. LeDuc, Jin Li, Lars Lind, Jian’an Luan, David A. Mackey, Massimo Mangino, Satu Männistö, Jayne F. Martin Carli, Carolina Medina-Gomez, Dennis O. Mook-Kanamori, Andrew P. Morris, Renée de Mutsert, Matthias Nauck, Ivana Prokic, Craig E. Pennell, Arund D. Pradhan, Bruce M. Psaty, Olli T. Raitakari, Robert A. Scott, Tea Skaaby, Konstantin Strauch, Kent D. Taylor, Alexander Teumer, Andre G. Uitterlinden, Ying Wu, Jie Yao, Mark Walker, Kari E. North, Peter Kovacs, M. Arfan Ikram, Cornelia M. van Duijn, Paul M. Ridker, Stephen Lye, Georg Homuth, Erik Ingelsson, Tim D. Spector, Barbara McKnight, Michael A. Province, Terho Lehtimäki, Linda S. Adair, Jerome I. Rotter, Alexander P. Reiner, James G. Wilson, Tamara B. Harris, Samuli Ripatti, Harald Grallert, James B. Meigs, Veikko Salomaa, Torben Hansen, Ko Willems van Dijk, Nicholas J. Wareham, Struan F.A. Grant, Claudia Langenberg, Timothy M. Frayling, Cecilia M. Lindgren, Karen L. Mohlke, Rudolph L. Leibel, Ruth J.F. Loos, Tuomas O. Kilpeläinen
    diabetes, Volume 69, Issue 12
  6.  Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans
    Pascal Schlosser, Yong Li, Peggy Sekula, Johannes Raffler, Franziska Grundner-Culemann, Maik Pietzner, Yurong Cheng, Matthias Wuttke, Inga Steinbrenner, Ulla T. Schultheiss, Fruzsina Kotsis, Tim Kacprowski, Lukas Forer, Birgit Hausknecht, Arif B. Ekici, Matthias Nauck, Uwe Völker, GCKD Investigators, Gerd Walz, Peter J. Oefner, Florian Kronenberg, Robert P. Mohney, Michael Köttgen, Karsten Suhre, Kai-Uwe Eckardt, Gabi Kastenmüller, Anna Köttgen
    Nature Genetics, Volume 52
    https://doi.org/10.1038/s41588-019-0567-8
  7. Importance of considering the growth response after partial harvesting and economic risk of discounted net revenues when optimizing uneven-aged forest management
    Katharina Messerer, Tim Kacprowski, Horst Kolo, Jan Baumbach, and Thomas Knoke
    Canadian Journal of Forest Research, Volume 50, Issue 5
    https://doi.org/10.1139/cjfr-2018-0546
  8. Long-term instability of the intestinal microbiome is associated with metabolic liver disease, low microbiota diversity, diabetes mellitus and impaired exocrine pancreatic function [open access]
    Fabian Frost, Tim Kacprowski, Malte Rühlemann, Maik Pietzner, Corinna Bang, Andre Franke, Matthias Nauck, Uwe Völker, Henry Völzke, Marcus Dörr, Jan Baumbach, Matthias Sendler, Christian Schulz, Julia Mayerle, Frank U. Weiss, Georg Homuth, Markus M. Lerch
    Gut, Volume 70
    http://dx.doi.org/10.1136/gutjnl-2020-322753
  9. miRNA Alterations Elicit Pathways Involved in Memory Decline and Synaptic Function in the Hippocampus of Aged Tg4-42 Mice [open access]
    Yvonne Bouter, Tim Kacprowski, Fanny Rößler, Lars R. Jensen, Andreas W. Kuss, Thomas A. Bayer
    Frontiers in Neuroscience, Volume 14
    https://doi.org/10.3389/fnins.2020.580524
  10. Multiple Sclerosis Atlas: A Molecular Map of Brain Lesion Stages in Progressive Multiple Sclerosis [open access]
    Tobias Frisch, Maria L. Elkjaer, Richard Reynolds, Tanja Maria Michel, Tim Kacprowski, Mark Burton, Torben A. Kruse, Mads Thomassen, Jan Baumbach, Zsolt Illes
    Network and Systems Medicine, Volume 3, Issue 1
    https://doi.org/10.1089/nsm.2020.0006
  11. NOX5-induced uncoupling of endothelial NO synthase is a causal mechanism and theragnostic target of an age-related hypertension endotype [open access]
    Mahmoud H. Elbatreek, Sepideh Sadegh, Elisa Anastasi, Emre Guney, Cristian Nogales, Tim Kacprowski, Ahmed A. Hassan, Andreas Teubner, Po-Hsun Huang, Chien-Yi Hsu, Paul M. H. Schiffers, Ger M. Janssen, Pamela W.M. Kleikers, Anil Wipat, Jan Baumbach, Jo G. R. De Mey, Harald H. H. W. Schmidt 
    PLOS Biology, Volume 18, Issue 11
    https://doi.org/10.1371/journal.pbio.3000885
  12. PySCNet: A tool for reconstructing and analyzing gene regulatory network from single-cell RNA-Seq data [open access]
    Ming Wu, Tim Kacprowski, Dietmar Zehn
    bioRxiv, preprint
    https://doi.org/10.1101/2020.12.18.423482
  13. sPLINK: a hybrid federated tool as a robust alternative to meta-analysis in genome-wide association studies [open access]
    Reza Nasirigerdeh, Reihaneh Torkzadehmahani, Julian Matschinske, Tobias Frisch, Markus List, Julian Späth, Stefan Weiss, Uwe Völker, Esa Pitkänen, Dominik Heider, Nina Kerstin Wenke, Georgios Kaissis, Daniel Rueckert, Tim Kacprowski, Jan Baumbach
    Genome Biology, Volume 23, Issue 32
  14. The Gut Microbiome in Patients With Chronic Pancreatitis Is Characterized by Significant Dysbiosis and Overgrowth by Opportunistic Pathogens [open access]
    Fabian Frost, Frank U. Weiss, Matthias Sendler, Tim Kacprowski, Malte Rühlemann, Corinna Bang, Andre Franke, Uwe Völker , Henry Völzke, Georg Lamprecht, Julia Mayerle, Ali A. Aghdassi, Georg Homuth,  Markus M. Lerch 
    Clinical and Translational Gastroenterology, Volume 11, Issue 9
    https://doi.org/10.14309/ctg.0000000000000232
  15. The Polygenic and Monogenic Basis of Blood Traits and Diseases [open access]
    Dragana Vuckovic, Erik L. Bao, Parsa Akbari, Caleb A. Lareau, Abdou Mousas, Tao Jiang, Ming-Huei Chen, Laura M. Raffield, Manuel Tardaguila, Jennifer E. Huffman, Scott C. Ritchie, Karyn Megy, Hannes Ponstingl, Christopher J. Penkett, Patrick K. Albers, Emilie M. Wigdor, Saori Sakaue, Arden Moscati, Regina Manansala, Ken Sin Lo, Huijun Qian, Masato Akiyama, Traci M. Bartz, Yoav Ben-Shlomo, Andrew Beswick, Jette Bork- Jensen, Erwin P. Bottinger, Jennifer A. Brody, Frank J.A. Van Rooij, Kumaraswamy N. Chitrala, Peter W.F. Wilson, Hélène Choquet, John Danesh, Emanuele Di Angelantonio, Niki Dimou, Jingzhong Ding, Paul Elliott, Tõnu Esko, Michele K. Evans, Stephan B. Felix, James S. Floyd, Linda Broer, Niels Grarup, Michael H. Guo, Qi Guo, Andreas Greinacher, Jeff Haessler, Torben Hansen, Joanna M.M. Howson, Wei Huang, Eric Jorgenson, Tim Kacprowski, Mika Kähönen, Yoichiro Kamatani, Masahiro Kanai, Savita Karthikeyan, Fotios Koskeridis, Leslie A. Lange, Terho Lehtimäki, Allan Linneberg, Yongmei Liu, Leo-Pekka Lyytikäinen, Ani Manichaikul, Koichi Matsuda, Karen L. Mohlke, Nina Mononen, Yoshinori Murakami, Girish N. Nadkarni, Kjell Nikus, Nathan Pankratz, Oluf Pedersen, Michael Preuss, Bruce M. Psaty, Olli T. Raitakari, Stephen S. Rich, Benjamin A.T. Rodriguez, Jonathan D. Rosen, Jerome I. Rotter, Petra Schubert, Cassandra N. Spracklen, Praveen Surendran, Hua Tang, Jean-Claude Tardif, Mohsen Ghanbari, Uwe Völker, Henry Völzke, Nicholas A. Watkins, Stefan Weiss, Na Cai, Kousik Kundu, Stephen B. Watt, Klaudia Walter, Alan B. Zonderman, Kelly Cho, Yun Li, Ruth J.F. Loos, Julian C. Knight, Michel Georges, Oliver Stegle, Evangelos Evangelou, Yukinori Okada, David J. Roberts, Michael Inouye, Andrew D. Johnson, Paul L. Auer, William J. Astle, Alexander P. Reiner, Adam S. Butterworth, Willem H. Ouwehand, Guillaume Lettre, Vijay G. Sankaran, and Nicole Soranzo.
    The Polygenic and Monogenic Basis of Blood Traits and Diseases, Cell, Volume 182, Issue 5
    https://doi.org/10.1016/j.cell.2020.08.008
  16. Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations [open access]
    Ming-Huei Chen, Laura M. Raffield, Abdou Mousas, Saori Sakaue, Jennifer E. Huffman,  Arden Moscati, Bhavi Trivedi, Tao Jiang, Parsa Akbari, Dragana Vuckovic, Erik L. Bao, Xue Zhong, Regina Manansala, Véronique Laplante,  Minhui Chen, Ken Sin Lo, Huijun Qian, Caleb A. Lareau, Mélissa Beaudoin,  Karen A. Hunt, Masato Akiyama, Traci M. Bartz,  Yoav Ben-Shlomo, Andrew Beswick, Jette Bork-Jensen, Erwin P. Bottinger, Jennifer A. Brody, Frank J.A.Van Rooij, Kumaraswamynaidu Chitrala, Kelly Cho, Hélène Choquet, Adolfo Correa, John Danesh, Emanuele Di Angelantonio, Niki Dimou, Jingzhong Ding, Paul Elliott, Tõnu Esko, Michele K. Evans,  James S. Floyd,  Linda Broer, Niels Grarup, Michael H. Guo, Andreas Greinacher, Jeff Haessler, Torben Hansen, Joanna M.M. Howson, Qin Qin Huang, Wei Huang, Eric Jorgenson, Tim Kacprowski, Mika Kähönen, Yoichiro Kamatani, Masahiro Kanai, Savita Karthikeyan, Fotis Koskeridis, Leslie A. Lange, Terho Lehtimäki, Markus M. Lerch,  Allan Linneberg,  Yongmei Liu, Leo-Pekka Lyytikäinen, Ani Manichaikul, Hilary C. Martin,  Koichi Matsuda, Karen L. Mohlke, Nina Mononen,  Yoshinori Murakami, Girish N. Nadkarni, Matthias Nauck, Kjell Nikus, Willem H. Ouwehand, Nathan Pankratz, Oluf Pedersen, Michael Preuss, Bruce M. Psaty, Olli T. Raitakari, David J. Roberts, Stephen S. Rich, Benjamin A.T. Rodriguez, Jonathan D. Rosen, Jerome I. Rotter, Petra Schubert, Cassandra N. Spracklen, Praveen Surendran, Hua Tang, Jean-Claude Tardif, Richard C. Trembath, Mohsen Ghanbari, Uwe Völker, Henry Völzke, Nicholas A. Watkins, Alan B. Zonderman, Peter W.F. Wilson, Yun Li, Adam S. Butterworth, Jean-François Gauchat, Charleston W.K. Chiang, Bingshan Li,  Ruth J.F. Loos, William J. Astle, Evangelos Evangelou, David A. Van Heel, Vijay G. Sankaran, Yukinori Okada, NicoleSoranzo, Andrew D. Johnson, Alexander P. Reiner, Paul L.Auer, Guillaume Lettre
    Cell, Volume 182, Issue 5
    https://doi.org/10.1016/j.cell.2020.06.045
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